August 8, 2023
Due to the marked overlap between long COVID and post-vaccine syndrome, please refer to the I-RECOVER Post-Vaccine Treatment protocol for detailed treatment strategies. This page highlights the differences between these two syndromes, namely ongoing organizing pneumonia.
About Long COVID
Long COVID, also known as Long Haul COVID Syndrome (LHCS) and more recently by the terminology “Post-acute sequelae of COVID-19 (PASC), is a diverse syndrome characterized by prolonged malaise, headaches, generalized fatigue, sleep difficulties, hair loss, smell disorder, decreased appetite, painful joints, dyspnea, chest pain, and cognitive dysfunction.
Up to 80% of patients experience prolonged illness after COVID-19. Furthermore, many of the symptoms of are common to COVID-19 vaccine-injured patients; indeed, both disorders are considered manifestations of “spike protein-related disease,” with a significant overlap in symptoms, pathogenesis, and treatment.
To complicate this issue further, many long COVID patients are vaccinated, and the symptomatology of vaccine-injured patients is often exacerbated by an acute COVID-19 infection.
Long COVID may persist for months after the acute infection and almost half of patients report reduced quality of life. Patients may suffer prolonged neuropsychological symptoms, including multiple domains of cognition. A puzzling feature of long COVID is that it is not predicted by initial disease severity; long COVID frequently occurs in people who had mild-to-moderate cases and in younger adults who did not require respiratory support or intensive care.
The symptom set of long COVID is, in the majority of cases, very similar to chronic inflammatory response syndrome (CIRS)/myalgic encephalomyelitis/chronic fatigue syndrome. An important differentiating factor from CIRS is the observation that long COVID continues to improve on its own, albeit slowly in the majority of cases. Another important observation is that long COVID includes more young people compared to severe COVID, which affects older people or persons with comorbidities. Furthermore, the similarity between mast cell activation syndrome (MCAS) and long COVID has been observed, and many consider long COVID to be a variant of MCAS.
Groups of symptoms
The clinical signs and symptoms of long COVID can be grouped into the following clusters. The reason for this grouping is to allow organ-specific targeted therapy or individualized therapy:
Respiratory: shortness of breath, congestion, persistent cough, etc.
Neurological/psychiatric: brain fog, malaise, tiredness, headaches, migraines, depression, inability to focus or concentrate, altered cognition, insomnia, vertigo, panic attacks, tinnitus, anosmia, phantom smells, etc.
Musculoskeletal: myalgias, fatigue, weakness, joint pains, inability to exercise, post-exertional malaise, inability to perform daily activities
Cardiovascular: Palpitations, arrhythmias, Raynaud-like syndrome, hypotension, and tachycardia on exertion
Autonomic: Postural tachycardia syndrome (POTs), abnormal sweating
Gastrointestinal disturbance: anorexia, diarrhea, bloating, vomiting, nausea, etc.
Dermatologic: itching, rashes, dermatographia
Mucus membranes: running nose, sneezing, burning and itchy eyes
Theories about why long COVID occurs
Long COVID likely results from a variety of pathogenetic mechanisms. Delayed treatment in the early symptomatic phase likely results in a high viral load (high spike protein load), which increases the risk and severity of long COVID. Other theories include:
Unresolved organizing pneumonia (activated pulmonary macrophages) leading to ongoing respiratory symptoms (shortness of breath, cough, reduced effort tolerance).
Monocyte and microglia activation. Persistence of spike protein in monocytes, macrophages, pericytes, and microglia results in an ongoing inflammatory response in an attempt by the immune system to clear the offending protein(s) and viral RNA fragments.
Neurological symptoms may be related to micro- and/or macrovascular thrombotic disease, which appears to be common in severe COVID-19 disease. The brain microvasculature expresses ACE-2 receptors and SARS-CoV-2 “pseudovirions” may bind to the microvascular endothelium, causing cerebral microvascular inflammation and clotting. Brain MRIs 3 months post-infection demonstrated microstructural changes in 55% of patients.
Due to molecular mimicry, the spike protein results in a vast spectrum of autoantibodies, many of which are associated with neurological complications. In particular, features of encephalopathy may be related to encephalitis and auto-reactive brain antibodies. Small fiber neuropathy and autonomic neuropathy (POTS) are directly associated with the presence of autoantibodies. Antibodies against the ACE2 receptor and G-coupled membrane receptors are commonly found in long COVID patients.
An unmasking or triggering of MCAS. Mast cells are present in the brain, especially in the median eminence of the hypothalamus, where they are located perivascularly close to nerve endings positive for corticotropin-releasing hormone. Following stimulation, mast cells release proinflammatory mediators such as histamine, tryptase, chemokines, and cytokines, which may result in neurovascular inflammation. The “brain fog,” cognitive impairment and general fatigue reported in long COVID may be due to mast cell-related neurovascular inflammation.
Immune suppression with reactivation of dormant viruses and/or reactivation of chronic bacterial infections (i.e., Lyme disease, etc.).
Approach to treatment
Please refer to I-RECOVER: Post-Vaccine Treatment for specific treatment guidance.
Patients with long COVID should be managed by clinicians who have experience treating this troublesome disorder. The treatment approach should be individualized to clinical signs and symptoms. However, in general, it is likely that patients who did not receive adequate antiviral treatment (e.g., ivermectin, etc.) and anti-inflammatory/macrophage repolarization treatment during the acute symptomatic phase of COVID-19 are more likely to develop long COVID.
The major difference between long COVID and post-vaccine syndrome is unresolved organizing pneumonia with persistent respiratory symptoms. Therefore, chest imaging is suggested in patients with ongoing respiratory symptoms (preferably a chest CT scan).
Those with unresolved pulmonary inflammation (organizing pneumonia with ground glass opacification) should be treated with a course of corticosteroids. Low-dose prednisolone or methylprednisolone (10 mg/day) for six weeks is suggested. However, the patients’ symptoms and CRP should be followed closely, as a dose escalation may be required in those who respond poorly.
Some patients who have recovered from COVID-19 organizing pneumonia will develop pulmonary fibrosis with associated limitation of activity. These patients should be referred to a pulmonologist with expertise in pulmonary fibrosis. Anti-fibrotic therapy may have a role in these patients, however additional data is required before this can be more generally recommended.
Initial screening tests for long COVID
Many patients undergo a vast array of tests, including cytokines and chemokines, autoantibodies, and toxicological studies, which are expensive, have very little clinical relevance, and only complicate their management. The following basic tests are recommended:
CBC with lymphocyte count and CD8+ count
Chemistry with liver function tests
Ferritin (macrophage activation)
Early morning cortisol
Thyroid function tests
HbA1C—long COVID patients are at an increased risk of developing diabetes
Autoantibodies: antiphospholipid antibody and ANA
In patients with allergic features or those who experienced an acute reaction to the vaccine, the following tests may be helpful: eosinophil count; IgE levels, RAST testing and/or skin testing. Serum tryptase, serum histamine and/or 24-h urine N-methylhistamine should be considered in MCAS. 
Reactivated viruses: Antibodies/PCR against EBV Herpes I/II and CMV
Vitamin D level
Specific Phenotypic tests
CXR / chest CT with contrast
This protocol is solely for educational purposes regarding potentially beneficial therapies for COVID-19. Never disregard professional medical advice because of something you have read on our website and releases. This protocol is not intended to be a substitute for professional medical advice, diagnosis, or treatment with regard to any patient. Treatment for an individual patient should rely on the judgement of a physician or other qualified health provider. Always seek their advice with any questions you may have regarding your health or medical condition. Please note our full disclaimer at: www.flccc.net/disclaimer